Sub-task
- [CTAKES-150] - Apostrophe parsing is not thread safe because of global variable
Bug
- [CTAKES-242] - XCasWriterCasConsumer issues with Apache cTAKES 3.1
- [CTAKES-244] - error using relation extractor launch (see also CTAKES-72)
- [CTAKES-245] - template filler - ClassNotFoundException: EntityMentionPairRelationExtractorAnnotator
- [CTAKES-251] - Infinite recursion in DrugMentionAnnotator.java
- [CTAKES-253] - YTEX ctakes patches port
- [CTAKES-254] - Apostrophe in contraction breaks TokenizerPTB
- [CTAKES-266] - tokenizer creates empty tokens before contractions
- [CTAKES-270] - ctakes-assertion-zoner missing from trunk's bin.xml in ctakes-distribution
- [CTAKES-271] - build fails due to mismatches within expectedoutput directory - e.g Sentence model was changed in 3.1.0
- [CTAKES-272] - regression test run during build of 3.1.1 fails with NoClassDefFoundError: CharacterOffsetToLineTokenConverter
- [CTAKES-305] - Broken link to Maven binary in documentation
New Feature
- [CTAKES-257] - utilities to turn dependency graphs into SimpleTree
Improvement
- [CTAKES-123] - README should mention how to get LVG database if it is going to mention how to get UMLS dictionaries
- [CTAKES-219] - configure log4j for ctakes-assertion module and remove stdout print statements
- [CTAKES-243] - Delete multiple copies of SentenceDetectorAnnotator.xml
- [CTAKES-264] - chunk adjuster iterates inefficiently
- [CTAKES-269] - log4j.xml filenotfound
Task
- [CTAKES-256] - Add a test doc that contains various edge cases for regression testing
- [CTAKES-259] - create a Maven profile for nightly builds that excludes the distribution module (.zips)
- [CTAKES-267] - create a 3.1.1 patch release
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